PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539553.1_FGP003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 540aa    MW: 57049.9 Da    PI: 9.8291
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539553.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57338.72.8e-12162251798
             DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                        w+ +De+ +L  l    +++g+  + ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg
  KN539553.1_FGP003 162 WTTDDEVKILEVLEAHFKSHGT--QLNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWG 250
                        ***********99777777774..4699***********98865538***********************9965.567889**********9 PP

             DUF573  98 s 98 
                        +
  KN539553.1_FGP003 251 K 251
                        5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-18162250IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAHATSAAGA LASWKETKKV AAPMGDRSVA GRESSRAILR KVGGGDGEGE EEEGGGAPES  60
EPEPEPVKKE SAKKTKAEAK KKRAAPEPAP SGKAKKAKPE KSSAAAAPEP APSSGKSKKA  120
AKAEAAKSAA AEPAPSTGKV SKSKLVPEPS PSSKSGKALS RWTTDDEVKI LEVLEAHFKS  180
HGTQLNVEGI IAAVGDSLER KSIKYSDMYE KVRRLKQRYE ATAKKVEHGG DLPAKEDDLR  240
MYQLSSEIWG KNAKDAGNLS KNKKGQAKKD KVSGDSKEAA KEDKVDEAAT AVNEKGGTLA  300
ENKKGKTNKQ KTGMETKVGS SKEAALAASP TKGKKKGSHK DKLDEEAKSG TAKVTSTIAT  360
DDDDDDDGTL GGSKREKAGK EELDGDTHIV MPKEATTTAA RDDGTLVGSK KGKADNGKLD  420
GDTHSVMPKE ATAGTQNGGI LTGGENHKEK VDKDANVPSI RREYAELQSL YPNLASFVNG  480
IEAQHPCGST FKRAFEFISD DKACTLESKI KKQKIAEVRM QLRLADTKKE VANALLGLLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041680.0AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0PREDICTED: neurofilament medium polypeptide
TrEMBLA0A0E0ND820.0A0A0E0ND82_ORYRU; Uncharacterized protein
STRINGBGIOSGA007986-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737